Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012221.1 | TRANSCRIPTIONAL ACTIVATOR PROTEIN MED |
| CAI8012222.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8012223.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8012224.1 | SUGAR ABC TRANSPORTER INTEGRAL MEMBRANE PROTEIN-RELATED |
| CAI8012229.1 | SERINE/THREONINE-PROTEIN KINASE NEK |
| CAI8012228.1 | SERINE/THREONINE-PROTEIN KINASE NEK |
| CAI8012227.1 | |
| CAI8012226.1 | |
| CAI8012225.1 | |
| CAI8012230.1 | SERINE/THREONINE-PROTEIN KINASE NEK |
| CAI8012231.1 | SERINE/THREONINE-PROTEIN KINASE NEK |
| CAI8012232.1 | CHONDROITIN SYNTHASE |
| CAI8012233.1 | CHONDROITIN SYNTHASE |
| CAI8012234.1 | CHONDROITIN SYNTHASE |
| CAI8012235.1 | KYNURENINE 3-MONOOXYGENASE |
| CAI8012236.1 | KYNURENINE 3-MONOOXYGENASE |
| CAI8012237.1 | LOW CALCIUM RESPONSE LOCUS PROTEIN T |
| CAI8012238.1 | LOW CALCIUM RESPONSE LOCUS PROTEIN S |
| CAI8012239.1 | EXODEOXYRIBONUCLEASE 7 LARGE SUBUNIT |
| CAI8012240.1 | AMINOPEPTIDASE |
| CAI8012241.1 | CATABOLIC 3-DEHYDROQUINASE |
| CAI8012242.1 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-LIKE 1, MITOCHONDRIAL-RELATED |
| CAI8012243.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8012244.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8012245.1 | NAD-DEPENDENT ALCOHOL DEHYDROGENASE |
| CAI8012246.1 | HEXOKINASE FAMILY MEMBER |
| CAI8012247.1 | SUGAR KINASE |
| CAI8012248.1 | SUGAR KINASE |
| CAI8012249.1 | ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC |
| CAI8012250.1 | ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC |
| CAI8012251.1 | TWO-COMPONENT RESPONSE REGULATOR |
| CAI8012252.1 | 5-KETO-D-GLUCONATE 5-REDUCTASE |
| CAI8012253.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8012254.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8012255.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8012256.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8012257.1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
| CAI8012258.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| CAI8012259.1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
| CAI8012260.1 | EXOSOME COMPLEX COMPONENT |
| CAI8012261.1 | EXOSOME COMPLEX COMPONENT |
| CAI8012262.1 | |
| CAI8012264.1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
| CAI8012263.1 | DOLICHOL-PHOSPHATE MANNOSYLTRANSFERASE SUBUNIT 1 |
| CAI8012265.1 | GLYCOSYL TRANSFERASE |
| CAI8012266.1 | ASPARTATE KINASE |
| CAI8012267.1 | SLL0198 PROTEIN-RELATED |
| CAI8012268.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8012269.1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| CAI8012270.1 | D-GALACTONATE DEHYDRATASE-RELATED |
