About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8012421.1POLYSACCHARIDE DEACETYLASE-RELATED
CAI8012422.1DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
CAI8012423.1GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
CAI8012424.1GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580)
CAI8012425.1
CAI8012426.1HEAT-SHOCK PROTEIN 20 FAMILY MEMBER
CAI8012427.1DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED
CAI8012428.1REDOX-CYCLING DRUG-SENSING TRANSCRIPTIONAL ACTIVATOR SOXR
CAI8012430.1ATP-DEPENDENT CLP PROTEASE
CAI8012429.1ATP-DEPENDENT CLP PROTEASE
CAI8012431.1ATP-DEPENDENT CLP PROTEASE
CAI8012432.1ATP-DEPENDENT CLP PROTEASE
CAI8012433.1DIHYDROOROTATE DEHYDROGENASE (QUINONE), MITOCHONDRIAL-RELATED
CAI8012434.1DNA-DIRECTED RNA POLYMERASE
CAI8012435.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
CAI8012436.1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
CAI8012437.1MOLYBDENUM TRANSPORT SYSTEM PERMEASE PROTEIN MODB
CAI8012438.1SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA
CAI8012439.16-PHOSPHOGLUCONATE PHOSPHATASE
CAI8012440.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012441.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012442.1AROM/DEHYDROQUINATE SYNTHASE
CAI8012443.1MAGNESIUM-CHELATASE SUBUNIT CHLI
CAI8012445.1THIAMINE-PHOSPHATE PYROPHOSPHORYLASE
CAI8012444.1THIAMINE-PHOSPHATE PYROPHOSPHORYLASE
CAI8012446.1DNA POLYMERASE I
CAI8012447.1LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED
CAI8012448.1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
CAI8012449.1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
CAI8012450.1TRANSPORT ATP-BINDING PROTEIN
CAI8012452.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
CAI8012451.1TRANSPORT ATP-BINDING PROTEIN
CAI8012453.1TRANSPORT ATP-BINDING PROTEIN
CAI8012454.1TRANSPORT ATP-BINDING PROTEIN
CAI8012456.1TRANSPORT ATP-BINDING PROTEIN
CAI8012455.1TRANSPORT ATP-BINDING PROTEIN
CAI8012457.1GLYCOSYL TRANSFERASE
CAI8012458.1ASPARTATE KINASE
CAI8012459.1HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
CAI8012461.1SYNTHASE (CCG-9), PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12100)-RELATED
CAI8012460.1SYNTHASE (CCG-9), PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12100)-RELATED
CAI8012462.1GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING
CAI8012464.1UNCHARACTERIZED PROTEIN YVCK-RELATED
CAI8012463.1UNCHARACTERIZED PROTEIN YVCK-RELATED
CAI8012465.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI8012466.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI8012467.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI8012468.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI8012469.1METHYLMALONYL-COA EPIMERASE
CAI8012470.1OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD
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