Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012471.1 | EXONUCLEASE |
| CAI8012472.1 | SPORULATION PROTEIN RELATED |
| CAI8012473.1 | RIBONUCLEASE J |
| CAI8012474.1 | TYPE-5 URACIL-DNA GLYCOSYLASE |
| CAI8012475.1 | |
| CAI8012477.1 | ACYL CARRIER PROTEIN |
| CAI8012476.1 | ACYL CARRIER PROTEIN |
| CAI8012478.1 | |
| CAI8012479.1 | N UTILIZATION SUBSTANCE PROTEIN B-RELATED |
| CAI8012480.1 | |
| CAI8012481.1 | |
| CAI8012482.1 | MALONYL-COA-ACYL CARRIER PROTEIN TRANSACYLASE, MITOCHONDRIAL |
| CAI8012483.1 | 50S RIBOSOMAL PROTEIN L32 |
| CAI8012484.1 | |
| CAI8012485.1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
| CAI8012486.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8012487.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8012488.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012489.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012490.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012491.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012492.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8012493.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8012494.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8012495.1 | |
| CAI8012496.1 | |
| CAI8012497.1 | |
| CAI8012498.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8012499.1 | |
| CAI8012500.1 | |
| CAI8012506.1 | |
| CAI8012505.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012502.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012507.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012503.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012504.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012508.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012509.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012510.1 | PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2 |
| CAI8012501.1 | |
| CAI8012512.1 | |
| CAI8012511.1 | |
| CAI8012513.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8012514.1 | MONOACYLGLYCEROL LIPASE |
| CAI8012518.1 | RIBONUCLEASE H1 |
| CAI8012517.1 | RIBONUCLEASE H1 |
| CAI8012516.1 | RIBONUCLEASE H1 |
| CAI8012515.1 | |
| CAI8012519.1 | SSL8005 PROTEIN |
| CAI8012520.1 | IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG |
