Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012522.1 | CYSTEINE DESULFURASE |
| CAI8012521.1 | CYSTEINE DESULFURASE |
| CAI8012523.1 | PROTEIN ABCI7, CHLOROPLASTIC |
| CAI8012524.1 | |
| CAI8012525.1 | |
| CAI8012526.1 | |
| CAI8012529.1 | |
| CAI8012530.1 | |
| CAI8012528.1 | |
| CAI8012527.1 | |
| CAI8012531.1 | |
| CAI8012532.1 | |
| CAI8012533.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8012534.1 | BLR3401 PROTEIN |
| CAI8012535.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8012536.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012537.1 | |
| CAI8012538.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012540.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012539.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012541.1 | |
| CAI8012542.1 | CHOLINE MONOOXYGENASE, CHLOROPLASTIC |
| CAI8012543.1 | BLR3401 PROTEIN |
| CAI8012544.1 | 5-KETO-D-GLUCONATE 5-REDUCTASE |
| CAI8012545.1 | |
| CAI8012546.1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
| CAI8012547.1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
| CAI8012548.1 | |
| CAI8012549.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8012550.1 | ACETYL-COA C-ACETYLTRANSFERASE |
| CAI8012551.1 | ENDORIBONUCLEASE-RELATED |
| CAI8012553.1 | TRANSAMIDASE |
| CAI8012554.1 | TRANSAMIDASE |
| CAI8012552.1 | TRANSAMIDASE |
| CAI8012555.1 | SHORT-CHAIN DEHYDROGENASE REDUCTASE |
| CAI8012556.1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
| CAI8012557.1 | PROTEASE FAMILY S9A OLIGOPEPTIDASE |
| CAI8012558.1 | OS01G0149700 PROTEIN |
| CAI8012559.1 | |
| CAI8012562.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8012561.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8012560.1 | TRNA-PSEUDOURIDINE SYNTHASE |
| CAI8012563.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8012564.1 | TRANSLATION INITIATION FACTOR IF-2-RELATED |
| CAI8012565.1 | TRANSCRIPTION TERMINATION FACTOR NUSA |
| CAI8012566.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI8012569.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8012568.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8012567.1 | 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE |
| CAI8012573.1 | 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE |
