Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012724.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012721.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012723.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012722.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012725.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012726.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8012730.1 | CONTACTIN 5 |
| CAI8012729.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012728.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012727.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8012731.1 | CONTACTIN 5 |
| CAI8012732.1 | |
| CAI8012733.1 | |
| CAI8012734.1 | CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19 |
| CAI8012735.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8012736.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8012737.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8012741.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012739.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012740.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012738.1 | RAS GTPASE-ACTIVATING PROTEINS |
| CAI8012742.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012743.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012744.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012745.1 | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER |
| CAI8012746.1 | ATPASE INHIBITOR/5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE |
| CAI8012747.1 | ACYL-COA THIOESTERASE |
| CAI8012748.1 | RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG |
| CAI8012750.1 | |
| CAI8012749.1 | |
| CAI8012751.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| CAI8012752.1 | |
| CAI8012753.1 | |
| CAI8012754.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8012755.1 | OS01G0253100 PROTEIN |
| CAI8012756.1 | OS01G0253100 PROTEIN |
| CAI8012757.1 | S-LOCUS LECTIN KINASE FAMILY PROTEIN |
| CAI8012758.1 | GLUTAMINE SYNTHETASE |
| CAI8012759.1 | ELONGATION FACTOR TU-RELATED |
| CAI8012760.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8012761.1 | SI:CH211-189E2.2 |
| CAI8012762.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8012763.1 | PROTEIN DCD1B |
| CAI8012765.1 | |
| CAI8012764.1 | |
| CAI8012766.1 | |
| CAI8012767.1 | |
| CAI8012768.1 | |
| CAI8012769.1 | |
| CAI8012770.1 | KELCH PROTEIN |
