Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012921.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8012922.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8012923.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8012924.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8012925.1 | CYSTEINE DESULFURYLASE FAMILY MEMBER |
| CAI8012926.1 | BLEOMYCIN HYDROLASE |
| CAI8012927.1 | BLEOMYCIN HYDROLASE |
| CAI8012928.1 | HOMOSERINE O-ACETYLTRANSFERASE |
| CAI8012929.1 | |
| CAI8012930.1 | GH17980P-RELATED |
| CAI8012931.1 | |
| CAI8012932.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8012933.1 | |
| CAI8012935.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012936.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012937.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012934.1 | OLIGOPEPTIDE TRANSPORT ATP-BINDING PROTEIN APPD |
| CAI8012939.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012938.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012940.1 | TRANSPORT ATP-BINDING PROTEIN |
| CAI8012941.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8012942.1 | TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1111A |
| CAI8012943.1 | IODOTHYRONINE DEIODINASE |
| CAI8012944.1 | |
| CAI8012945.1 | |
| CAI8012946.1 | |
| CAI8012947.1 | |
| CAI8012948.1 | UNCHARACTERIZED |
| CAI8012949.1 | |
| CAI8012950.1 | SODIUM ION/PROTON ANTIPORTER NHAA-RELATED |
| CAI8012951.1 | TRANSAMIDASE |
| CAI8012952.1 | PAREP8-RELATED |
| CAI8012953.1 | TRANSAMIDASE |
| CAI8012954.1 | MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT |
| CAI8012955.1 | MOLYBDOPTERIN SYNTHASE RELATED |
| CAI8012956.1 | UPF0109 PROTEIN SCO5592 |
| CAI8012958.1 | 30S RIBOSOMAL PROTEIN S16 |
| CAI8012957.1 | |
| CAI8012959.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8012960.1 | METHIONYL-TRNA FORMYLTRANSFERASE |
| CAI8012961.1 | - |
| CAI8012962.1 | |
| CAI8012963.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI8012964.1 | SIROHEME BIOSYNTHESIS PROTEIN MET8 |
| CAI8012965.1 | GLUTAMYL-TRNA REDUCTASE |
| CAI8012966.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8012967.1 | SIROHEME SYNTHASE-RELATED |
| CAI8012968.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI8012969.1 | |
| CAI8012970.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
