Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013071.1 | DNA-INVERTASE FROM LAMBDOID PROPHAGE |
| CAI8013072.1 | |
| CAI8013073.1 | |
| CAI8013074.1 | FATTY ACID DESATURASE 2 |
| CAI8013075.1 | |
| CAI8013076.1 | |
| CAI8013077.1 | ANTITOXIN HICB |
| CAI8013078.1 | ALKALINE PHOSPHATASE LIKE PROTEIN |
| CAI8013079.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8013080.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8013081.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8013082.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8013083.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8013087.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013086.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013085.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013088.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013084.1 | |
| CAI8013089.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013091.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013092.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013090.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013093.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013094.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013096.1 | |
| CAI8013095.1 | |
| CAI8013097.1 | |
| CAI8013098.1 | |
| CAI8013099.1 | |
| CAI8013100.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8013101.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8013102.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8013103.1 | 50S/60S RIBOSOMAL PROTEIN L14/L23 |
| CAI8013104.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8013105.1 | RIBOSOMAL PROTEIN L2 |
| CAI8013106.1 | |
| CAI8013107.1 | |
| CAI8013108.1 | 50S RIBOSOMAL PROTEIN L4 |
| CAI8013109.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8013110.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8013111.1 | RIBOSOMAL PROTEIN S7 |
| CAI8013112.1 | |
| CAI8013113.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8013114.1 | PHOSPHOMETHYLPYRIMIDINE KINASE |
| CAI8013115.1 | SOLEUCYL-TRNA SYNTHETASE |
| CAI8013116.1 | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE |
| CAI8013121.1 | |
| CAI8013119.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8013118.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
| CAI8013117.1 | SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED |
