Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013172.1 | INVERTED FORMIN-2 |
| CAI8013171.1 | INVERTED FORMIN-2 |
| CAI8013170.1 | INVERTED FORMIN-2 |
| CAI8013174.1 | INVERTED FORMIN-2 |
| CAI8013175.1 | |
| CAI8013176.1 | |
| CAI8013177.1 | |
| CAI8013178.1 | AMIDOHYDROLASE |
| CAI8013179.1 | ENOYL-COA HYDRATASE-RELATED |
| CAI8013180.1 | TRANSPOSASE INSH FOR INSERTION SEQUENCE ELEMENT IS5A-RELATED |
| CAI8013181.1 | |
| CAI8013182.1 | |
| CAI8013183.1 | ALDEHYDE DEHYDROGENASE-RELATED |
| CAI8013184.1 | PROPANEDIOL UTILIZATION PROTEIN PDUA |
| CAI8013185.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8013186.1 | ISOCITRATE DEHYDROGENASE [NADP] |
| CAI8013187.1 | NIPSNAP-RELATED |
| CAI8013191.1 | |
| CAI8013189.1 | |
| CAI8013190.1 | |
| CAI8013188.1 | |
| CAI8013192.1 | |
| CAI8013193.1 | |
| CAI8013194.1 | |
| CAI8013195.1 | |
| CAI8013196.1 | EXPRESSED PROTEIN |
| CAI8013197.1 | |
| CAI8013198.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 |
| CAI8013199.1 | |
| CAI8013200.1 | |
| CAI8013201.1 | |
| CAI8013202.1 | |
| CAI8013203.1 | |
| CAI8013204.1 | CENTROSOMAL PROTEIN OF 19K CEP19 |
| CAI8013206.1 | CENTROSOMAL PROTEIN OF 19K CEP19 |
| CAI8013205.1 | |
| CAI8013207.1 | |
| CAI8013208.1 | UNCHARACTERIZED |
| CAI8013209.1 | UNCHARACTERIZED |
| CAI8013210.1 | |
| CAI8013211.1 | |
| CAI8013213.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8013212.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8013214.1 | HISTONE DEACETYLASE 2-RELATED |
| CAI8013216.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8013215.1 | HISTONE DEACETYLASE HDAC1-RELATED |
| CAI8013217.1 | |
| CAI8013218.1 | |
| CAI8013219.1 | |
| CAI8013222.1 | TUBULIN POLYGLUTAMYLASE |
