Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8012971.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8012972.1 | DNA HELICASE RECQ FAMILY MEMBER |
| CAI8012973.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8012975.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8012974.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8012976.1 | - |
| CAI8012977.1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| CAI8012978.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8012979.1 | SHIKIMATE KINASE |
| CAI8012980.1 | FIDO DOMAIN-CONTAINING PROTEIN DDB_G0283145 |
| CAI8012981.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI8012982.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8012983.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8012984.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8012985.1 | QUEUINE TRNA-RIBOSYLTRANSFERASE |
| CAI8012986.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8012988.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8012987.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8012989.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8012990.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM ATP-BINDING PROTEIN PROV |
| CAI8012991.1 | GLYCINE BETAINE/PROLINE BETAINE TRANSPORT SYSTEM PERMEASE PROTEIN PROW |
| CAI8012992.1 | |
| CAI8012993.1 | |
| CAI8012994.1 | |
| CAI8012995.1 | |
| CAI8012998.1 | PROTEIN SIDEKICK |
| CAI8012999.1 | CYTOKINE RECEPTOR |
| CAI8013000.1 | PROTEIN SIDEKICK |
| CAI8012997.1 | PROTEIN SIDEKICK |
| CAI8012996.1 | |
| CAI8013001.1 | CYTOKINE RECEPTOR |
| CAI8013002.1 | |
| CAI8013003.1 | |
| CAI8013005.1 | PROTON MYO-INOSITOL COTRANSPORTER |
| CAI8013004.1 | PROTON MYO-INOSITOL COTRANSPORTER |
| CAI8013006.1 | PROTON MYO-INOSITOL COTRANSPORTER |
| CAI8013007.1 | - |
| CAI8013008.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8013010.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8013009.1 | |
| CAI8013011.1 | |
| CAI8013012.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8013014.1 | |
| CAI8013013.1 | - |
| CAI8013015.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8013017.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8013016.1 | CYTOCHROME P450 FAMILY 3 |
| CAI8013018.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8013019.1 | |
| CAI8013021.1 |
