Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013120.1 | |
| CAI8013122.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8013123.1 | - |
| CAI8013124.1 | 5-OXOPROLINASE RELATED |
| CAI8013125.1 | ENOYL-COA HYDRATASE |
| CAI8013127.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8013126.1 | TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE |
| CAI8013128.1 | BARDET-BIEDL SYNDROME PROTEIN 5 |
| CAI8013129.1 | BARDET-BIEDL SYNDROME PROTEIN 5 |
| CAI8013130.1 | BARDET-BIEDL SYNDROME PROTEIN 5 |
| CAI8013131.1 | BARDET-BIEDL SYNDROME PROTEIN 5 |
| CAI8013132.1 | BARDET-BIEDL SYNDROME PROTEIN 5 |
| CAI8013134.1 | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 |
| CAI8013133.1 | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE |
| CAI8013135.1 | |
| CAI8013136.1 | INOSITOL POLYPHOSPHATE KINASE |
| CAI8013137.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8013138.1 | DYNACTIN SUBUNIT |
| CAI8013142.1 | CENTROMERE PROTEIN E |
| CAI8013140.1 | CENTROMERE PROTEIN E |
| CAI8013139.1 | CENTROMERE PROTEIN E |
| CAI8013141.1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
| CAI8013143.1 | CENTROMERE PROTEIN E |
| CAI8013144.1 | CENTROMERE PROTEIN E |
| CAI8013145.1 | |
| CAI8013146.1 | |
| CAI8013148.1 | GRB2-ASSOCIATED-BINDING PROTEIN |
| CAI8013147.1 | |
| CAI8013149.1 | |
| CAI8013150.1 | REPLICATION PROTEIN A3 |
| CAI8013151.1 | REPLICATION PROTEIN A3 |
| CAI8013154.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8013152.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8013153.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8013155.1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
| CAI8013157.1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
| CAI8013156.1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
| CAI8013158.1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
| CAI8013159.1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
| CAI8013160.1 | EAP30 SUBUNIT OF ELL COMPLEX |
| CAI8013161.1 | UNCHARACTERIZED |
| CAI8013162.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8013163.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8013164.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8013167.1 | INVERTED FORMIN-2 |
| CAI8013166.1 | INVERTED FORMIN-2 |
| CAI8013165.1 | INVERTED FORMIN-2 |
| CAI8013168.1 | INVERTED FORMIN-2 |
| CAI8013169.1 | |
| CAI8013173.1 | INVERTED FORMIN-2 |
