Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013223.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8013221.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8013220.1 | |
| CAI8013224.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8013225.1 | |
| CAI8013228.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44 |
| CAI8013227.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44 |
| CAI8013226.1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44 |
| CAI8013229.1 | TRANS-GOLGI PROTEIN GMX33 |
| CAI8013230.1 | PROTEIN DISULFIDE ISOMERASE |
| CAI8013231.1 | 60S RIBOSOMAL PROTEIN L17 |
| CAI8013233.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8013232.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8013234.1 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER |
| CAI8013237.1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
| CAI8013236.1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
| CAI8013235.1 | CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A |
| CAI8013239.1 | S PHASE CYCLIN A-ASSOCIATED PROTEIN IN THE ENDOPLASMIC RETICULUM |
| CAI8013240.1 | INSULIN GENE ENHANCER PROTEIN |
| CAI8013238.1 | HOMER |
| CAI8013241.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8013243.1 | RIBOSOMAL PROTEIN L17 |
| CAI8013242.1 | RIBOSOMAL PROTEIN L17 |
| CAI8013244.1 | RIBOSOMAL PROTEIN L17 |
| CAI8013245.1 | SWI5-DEPENDENT RECOMBINATION DNA REPAIR PROTEIN 1 HOMOLOG |
| CAI8013246.1 | LUPUS LA PROTEIN-RELATED |
| CAI8013247.1 | |
| CAI8013248.1 | DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE |
| CAI8013250.1 | MRNA EXPORT FACTOR AND BUB3 |
| CAI8013249.1 | MRNA EXPORT FACTOR AND BUB3 |
| CAI8013251.1 | |
| CAI8013252.1 | |
| CAI8013253.1 | |
| CAI8013254.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013256.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013255.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013257.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013258.1 | |
| CAI8013261.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013262.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013263.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013264.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013260.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013265.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013266.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013267.1 | NUCLEOPORIN NUP188 HOMOLOG |
| CAI8013259.1 | |
| CAI8013268.1 | |
| CAI8013273.1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
| CAI8013271.1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
