Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013419.1 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE |
| CAI8013418.1 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE |
| CAI8013417.1 | |
| CAI8013424.1 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE |
| CAI8013425.1 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE |
| CAI8013427.1 | CGI-41 METHYLTRANSFERASE |
| CAI8013426.1 | CGI-41 METHYLTRANSFERASE |
| CAI8013428.1 | CGI-41 METHYLTRANSFERASE |
| CAI8013429.1 | CGI-41 METHYLTRANSFERASE |
| CAI8013430.1 | |
| CAI8013431.1 | |
| CAI8013433.1 | ARGININE OR CREATINE KINASE |
| CAI8013432.1 | ARGININE OR CREATINE KINASE |
| CAI8013434.1 | - |
| CAI8013435.1 | COMM DOMAIN-CONTAINING PROTEIN 1 |
| CAI8013436.1 | COMM DOMAIN-CONTAINING PROTEIN 1 |
| CAI8013437.1 | |
| CAI8013438.1 | |
| CAI8013439.1 | TRANSAMIDASE |
| CAI8013440.1 | |
| CAI8013441.1 | |
| CAI8013442.1 | |
| CAI8013443.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8013444.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 |
| CAI8013447.1 | ANKYRIN REPEAT CONTAINING |
| CAI8013448.1 | |
| CAI8013446.1 | ANKYRIN REPEAT CONTAINING |
| CAI8013445.1 | |
| CAI8013449.1 | |
| CAI8013450.1 | |
| CAI8013451.1 | |
| CAI8013452.1 | TRAFFICKING KINESIN-BINDING PROTEIN |
| CAI8013453.1 | |
| CAI8013454.1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 |
| CAI8013455.1 | |
| CAI8013456.1 | |
| CAI8013457.1 | |
| CAI8013458.1 | FERREDOXIN-THIOREDOXIN REDUCTASE CATALYTIC CHAIN, CHLOROPLASTIC |
| CAI8013461.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8013460.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8013459.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8013462.1 | SPHINGOMYELIN PHOSPHODIESTERASE |
| CAI8013463.1 | |
| CAI8013464.1 | |
| CAI8013465.1 | |
| CAI8013466.1 | UNCHARACTERIZED |
| CAI8013467.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI8013468.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
| CAI8013469.1 | DEATH-ASSOCIATED PROTEIN 1 |
| CAI8013470.1 |
