About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013471.1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C
CAI8013472.1
CAI8013473.1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
CAI8013474.1-
CAI8013475.1-
CAI8013476.1-
CAI8013477.1CHST5 PROTEIN
CAI8013478.1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21
CAI8013479.1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
CAI8013480.1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
CAI8013481.1TRNA-SPECIFIC ADENOSINE DEAMINASE 1
CAI8013482.1
CAI8013484.12-HYDROXYACID DEHYDROGENASE-RELATED
CAI8013483.12-HYDROXYACID DEHYDROGENASE-RELATED
CAI8013485.1NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
CAI8013486.1NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
CAI8013487.1NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
CAI8013488.1NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
CAI8013489.1NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1
CAI8013491.1MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED
CAI8013490.1
CAI8013493.1
CAI8013492.1
CAI8013494.1
CAI8013498.1FG-GAP REPEAT-CONTAINING PROTEIN
CAI8013497.1FG-GAP REPEAT-CONTAINING PROTEIN
CAI8013496.1FG-GAP REPEAT-CONTAINING PROTEIN
CAI8013495.1FG-GAP REPEAT-CONTAINING PROTEIN
CAI8013499.1LD44762P
CAI8013500.1
CAI8013501.1LD44762P
CAI8013502.1
CAI8013503.1
CAI8013504.1
CAI8013506.1
CAI8013505.1
CAI8013509.1
CAI8013508.1
CAI8013507.1
CAI8013511.1
CAI8013510.1
CAI8013512.1
CAI8013513.1FLAP ENDONUCLEASE FAMILY MEMBER
CAI8013514.1FLAP ENDONUCLEASE FAMILY MEMBER
CAI8013515.1
CAI8013516.1
CAI8013517.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8013518.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8013519.1ALANYL-TRNA EDITING PROTEIN
CAI8013520.1N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
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