Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013572.1 | SMAD |
| CAI8013571.1 | SMAD |
| CAI8013573.1 | SMAD |
| CAI8013575.1 | SPERMATHECAL PHYSIOLOGY VARIANT |
| CAI8013574.1 | 3BP-1 RELATED RHOGAP |
| CAI8013576.1 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 2 |
| CAI8013577.1 | |
| CAI8013578.1 | ATAXIN 2-BINDING PROTEIN 1-RELATED |
| CAI8013579.1 | DNA-DIRECTED RNA POLYMERASE |
| CAI8013580.1 | |
| CAI8013581.1 | |
| CAI8013588.1 | ADENYLOSUCCINATE LYASE |
| CAI8013587.1 | ADENYLOSUCCINATE LYASE |
| CAI8013585.1 | ADENYLOSUCCINATE LYASE |
| CAI8013583.1 | ADENYLOSUCCINATE LYASE |
| CAI8013584.1 | ADENYLOSUCCINATE LYASE |
| CAI8013586.1 | ADENYLOSUCCINATE LYASE |
| CAI8013582.1 | ADENYLOSUCCINATE LYASE |
| CAI8013589.1 | |
| CAI8013591.1 | UNCHARACTERIZED |
| CAI8013590.1 | UNCHARACTERIZED |
| CAI8013592.1 | UNCHARACTERIZED |
| CAI8013593.1 | UNCHARACTERIZED |
| CAI8013594.1 | UNCHARACTERIZED |
| CAI8013595.1 | UNCHARACTERIZED |
| CAI8013596.1 | UNCHARACTERIZED |
| CAI8013597.1 | UNCHARACTERIZED |
| CAI8013599.1 | ACTIN |
| CAI8013600.1 | ACTIN |
| CAI8013598.1 | ACTIN |
| CAI8013601.1 | |
| CAI8013602.1 | |
| CAI8013605.1 | OS05G0565100 PROTEIN |
| CAI8013604.1 | OS05G0565100 PROTEIN |
| CAI8013603.1 | |
| CAI8013606.1 | OS05G0565100 PROTEIN |
| CAI8013608.1 | EXPORTIN-6 |
| CAI8013607.1 | EXPORTIN-6 |
| CAI8013609.1 | EXPORTIN-6 |
| CAI8013610.1 | EXPORTIN-6 |
| CAI8013611.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013612.1 | TYROSINE-PROTEIN KINASE |
| CAI8013613.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013614.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8013615.1 | |
| CAI8013616.1 | |
| CAI8013617.1 | SYNAPTOBREVIN FAMILY MEMBER |
| CAI8013619.1 | 2-5 OLIGOADENYLATE SYNTHETASE |
| CAI8013618.1 | 2-5 OLIGOADENYLATE SYNTHETASE |
| CAI8013620.1 | 2-5 OLIGOADENYLATE SYNTHETASE |
