About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013671.1
CAI8013672.1
CAI8013673.1
CAI8013674.1
CAI8013675.1
CAI8013677.1
CAI8013676.1
CAI8013678.1
CAI8013679.1
CAI8013680.1
CAI8013681.1
CAI8013682.1
CAI8013683.1
CAI8013684.1
CAI8013685.1SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM
CAI8013686.1ATP7, ISOFORM B
CAI8013687.1ATP7, ISOFORM B
CAI8013688.1ACETYL-COENZYME A SYNTHETASE
CAI8013689.1
CAI8013690.1
CAI8013691.1UNIVERSAL STRESS PROTEIN SLR1230
CAI8013692.1AMIDOHYDROLASE
CAI8013693.1
CAI8013694.1GNAT FAMILY N-ACETYLTRANSFERASE
CAI8013695.1EXSB FAMILY PROTEIN
CAI8013696.1NICKEL INSERTION PROTEIN-RELATED
CAI8013697.1ARGINYL-TRNA SYNTHETASE
CAI8013698.15'-NUCLEOTIDASE SURE
CAI8013699.1
CAI8013700.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC
CAI8013701.1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP38, CHLOROPLASTIC
CAI8013702.1
CAI8013703.1POTE ANKYRIN DOMAIN
CAI8013705.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8013708.1OS01G0253100 PROTEIN
CAI8013707.1OS01G0253100 PROTEIN
CAI8013706.1SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
CAI8013704.1
CAI8013710.1
CAI8013709.1
CAI8013711.1
CAI8013713.1
CAI8013712.1
CAI8013714.1
CAI8013715.1
CAI8013717.1UNCHARACTERIZED
CAI8013718.1UNCHARACTERIZED
CAI8013716.1UNCHARACTERIZED
CAI8013719.1UNCHARACTERIZED
CAI8013720.1
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