About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013771.1DDB1- AND CUL4-ASSOCIATED FACTOR 15
CAI8013772.1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA
CAI8013774.1UNCHARACTERIZED
CAI8013773.1UNCHARACTERIZED
CAI8013775.1UNCHARACTERIZED
CAI8013776.1MALE FERTILITY FACTOR KL5
CAI8013779.1
CAI8013778.1
CAI8013777.1UNCHARACTERIZED
CAI8013780.1UNCHARACTERIZED
CAI8013781.1UNCHARACTERIZED
CAI8013784.1LYSINE-SPECIFIC DEMETHYLASE
CAI8013785.1LYSINE-SPECIFIC DEMETHYLASE
CAI8013783.1LYSINE-SPECIFIC DEMETHYLASE
CAI8013782.1LYSINE-SPECIFIC DEMETHYLASE
CAI8013786.1IMPORTIN BETA
CAI8013787.1IMPORTIN BETA
CAI8013788.1IMPORTIN BETA
CAI8013789.1IMPORTIN BETA
CAI8013791.1WD40 REPEAT PF20
CAI8013792.1WD40 REPEAT PF20
CAI8013790.1WD40 REPEAT PF20
CAI8013793.1WD40 REPEAT PF20
CAI8013794.1WD40 REPEAT PF20
CAI8013795.1WD40 REPEAT PF20
CAI8013796.1
CAI8013799.1CYTOKINE RECEPTOR
CAI8013798.1CYTOKINE RECEPTOR
CAI8013797.1CYTOKINE RECEPTOR
CAI8013800.1CARCINOEMBRYONIC ANTIGEN-RELATED CELL ADHESION MOLECULE 19
CAI8013801.1
CAI8013802.1
CAI8013803.1
CAI8013804.1
CAI8013805.1PROTEIN SIDEKICK
CAI8013806.1
CAI8013807.1SESQUIPEDALIAN
CAI8013808.1TENASCIN
CAI8013810.1CYTOKINE RECEPTOR
CAI8013809.1CYTOKINE RECEPTOR
CAI8013811.1
CAI8013812.1PROTEIN SIDEKICK
CAI8013813.1
CAI8013815.1IG-LIKE DOMAIN-CONTAINING PROTEIN
CAI8013814.1
CAI8013816.1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
CAI8013817.1
CAI8013820.1DIACYLGLYCEROL KINASE
CAI8013819.1DIACYLGLYCEROL KINASE
CAI8013818.1DIACYLGLYCEROL KINASE
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