About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013918.1
CAI8013922.1TENASCIN
CAI8013923.15-OXOPROLINASE RELATED
CAI8013924.1LUCIFERASE-LIKE MONOOXYGENASE
CAI8013925.1AMINOHYDROLASE SSNA-RELATED
CAI8013926.1PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR
CAI8013928.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI8013927.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI8013929.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI8013930.1
CAI8013931.1TRANSPOSASE RV3428C-RELATED
CAI8013932.1
CAI8013933.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8013934.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8013935.1BLEOMYCIN HYDROLASE
CAI8013936.1PEPTIDE METHIONINE SULFOXIDE REDUCTASE 2
CAI8013937.1PEPTIDE METHIONINE SULFOXIDE REDUCTASE 2
CAI8013938.1EPOXIDE HYDROLASE
CAI8013939.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8013940.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8013944.1TRANSAMIDASE
CAI8013943.1TRANSAMIDASE
CAI8013942.1TRANSAMIDASE
CAI8013941.1TRANSAMIDASE
CAI8013947.1ACYL-COA DEHYDROGENASE
CAI8013946.1ACYL-COA DEHYDROGENASE
CAI8013945.1ACYL-COA DEHYDROGENASE
CAI8013948.1ACYL-COA DEHYDROGENASE
CAI8013949.1ACYL-COA DEHYDROGENASE
CAI8013950.1ACYL-COA DEHYDROGENASE
CAI8013951.1ACYL-COA DEHYDROGENASE
CAI8013952.1
CAI8013953.1INTERFERON-RELATED DEVELOPMENTAL REGULATOR
CAI8013956.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013957.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013954.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013955.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013958.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013959.1LONG-CHAIN-FATTY-ACID--COA LIGASE
CAI8013960.1HEN1
CAI8013961.1MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT
CAI8013963.1MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT
CAI8013962.1MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNIT
CAI8013964.1
CAI8013965.1
CAI8013966.1GENERAL VESICULAR TRANSPORT FACTOR P115
CAI8013967.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
CAI8013968.1UNCHARACTERIZED
CAI8013969.1UNCHARACTERIZED
CAI8013970.1
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