About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013721.1UNCHARACTERIZED
CAI8013722.1SOLUTE CARRIER FAMILY 25 MEMBER 44
CAI8013723.1SOLUTE CARRIER FAMILY 25 MEMBER 44
CAI8013725.1
CAI8013724.1
CAI8013726.1HYDROLASE
CAI8013727.1HYDROLASE
CAI8013728.1HYDROLASE
CAI8013731.1
CAI8013730.1
CAI8013729.1
CAI8013732.1
CAI8013733.1
CAI8013734.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8013735.1CABRIOLET.-RELATED
CAI8013736.1SLR5058 PROTEIN
CAI8013737.1
CAI8013741.1
CAI8013739.1
CAI8013738.1
CAI8013743.1
CAI8013742.1
CAI8013740.1
CAI8013744.1
CAI8013745.1CYSTEINE DESULFURYLASE FAMILY MEMBER
CAI8013746.1BLEOMYCIN HYDROLASE
CAI8013747.1BLEOMYCIN HYDROLASE
CAI8013748.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8013749.1THIAMINE PYROPHOSPHATE ENZYMES
CAI8013750.1METHYLTRANSFERASE
CAI8013751.1ZGC:194242
CAI8013753.1ASPARTATE 1-DECARBOXYLASE
CAI8013752.1ASPARTATE 1-DECARBOXYLASE
CAI8013754.1ZGC:162816-RELATED
CAI8013755.1
CAI8013756.1
CAI8013757.1
CAI8013758.1METHIONINE SYNTHASE
CAI8013759.1METHIONINE SYNTHASE
CAI8013760.1
CAI8013761.1SUPEROXIDE DISMUTASE CU-ZN -RELATED
CAI8013763.1
CAI8013762.1
CAI8013764.1
CAI8013765.1
CAI8013769.1DDB1- AND CUL4-ASSOCIATED FACTOR 15
CAI8013768.1DDB1- AND CUL4-ASSOCIATED FACTOR 15
CAI8013770.1DDB1- AND CUL4-ASSOCIATED FACTOR 15
CAI8013767.1DDB1- AND CUL4-ASSOCIATED FACTOR 15
CAI8013766.1
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