Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8013621.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE |
| CAI8013623.1 | PROLINE-RICH PROTEIN PRCC |
| CAI8013622.1 | PROLINE-RICH PROTEIN PRCC |
| CAI8013624.1 | |
| CAI8013625.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8013626.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8013627.1 | CATECHOL-2,3-DIOXYGENASE |
| CAI8013628.1 | ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL |
| CAI8013629.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8013630.1 | |
| CAI8013631.1 | ARSENITE METHYLTRANSFERASE |
| CAI8013632.1 | SORTILIN RELATED |
| CAI8013633.1 | |
| CAI8013634.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8013635.1 | LEUCINE RICH REPEAT KINASE 2 |
| CAI8013636.1 | UNCHARACTERIZED PROTEIN YJGR-RELATED |
| CAI8013637.1 | |
| CAI8013646.1 | UNCHARACTERIZED |
| CAI8013643.1 | UNCHARACTERIZED |
| CAI8013645.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013644.1 | UNCHARACTERIZED |
| CAI8013647.1 | UNCHARACTERIZED |
| CAI8013641.1 | UNCHARACTERIZED |
| CAI8013640.1 | UNCHARACTERIZED |
| CAI8013639.1 | UNCHARACTERIZED |
| CAI8013638.1 | UNCHARACTERIZED |
| CAI8013648.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013642.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013649.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013650.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013651.1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
| CAI8013658.1 | HEAT SHOCK REGULATED 2 |
| CAI8013659.1 | HEAT SHOCK REGULATED 2 |
| CAI8013656.1 | HEAT SHOCK REGULATED 2 |
| CAI8013652.1 | HEAT SHOCK REGULATED 2 |
| CAI8013660.1 | HEAT SHOCK REGULATED 2 |
| CAI8013654.1 | HEAT SHOCK REGULATED 2 |
| CAI8013653.1 | HEAT SHOCK REGULATED 2 |
| CAI8013657.1 | HEAT SHOCK REGULATED 2 |
| CAI8013662.1 | HEAT SHOCK REGULATED 2 |
| CAI8013661.1 | |
| CAI8013655.1 | |
| CAI8013665.1 | HEAT SHOCK REGULATED 2 |
| CAI8013664.1 | HEAT SHOCK REGULATED 2 |
| CAI8013663.1 | |
| CAI8013666.1 | PROTEIN PHOSPHATASE 2C |
| CAI8013667.1 | |
| CAI8013668.1 | |
| CAI8013669.1 | |
| CAI8013670.1 |
