About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013872.1HEAVYWEIGHT, ISOFORM A
CAI8013870.1SH2-SH3 ADAPTOR PROTEIN-RELATED
CAI8013869.1SH2-SH3 ADAPTOR PROTEIN-RELATED
CAI8013868.1SH2-SH3 ADAPTOR PROTEIN-RELATED
CAI8013871.1
CAI8013867.1SH2-SH3 ADAPTOR PROTEIN-RELATED
CAI8013877.1EUKARYOTIC TRANSLATION INITIATION FACTOR 2C
CAI8013878.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8013879.1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
CAI8013880.1SUGAR KINASE
CAI8013881.1SUGAR KINASE
CAI8013882.1THIAMINE BIOSYNTHESIS PROTEIN THIC
CAI8013883.1THIAMINE BIOSYNTHESIS PROTEIN THIC
CAI8013884.1THIAMINE BIOSYNTHESIS PROTEIN THIC
CAI8013885.1
CAI8013886.1SOLEUCYL-TRNA SYNTHETASE
CAI8013887.1SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54
CAI8013888.1
CAI8013889.1ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC
CAI8013890.12,3-DIKETO-L-GULONATE TRAP TRANSPORTER SMALL PERMEASE PROTEIN YIAM
CAI8013891.1
CAI8013892.1
CAI8013893.1
CAI8013894.1METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
CAI8013896.1SULFUR CARRIER PROTEIN SLR0821-RELATED
CAI8013895.1
CAI8013897.1DNA GYRASE/TOPOISOMERASE SUBUNIT B
CAI8013898.1CYSTATHIONINE BETA-SYNTHASE
CAI8013900.1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
CAI8013899.1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
CAI8013901.1CHROMOSOME TRANSMISSION FIDELITY FACTOR 18
CAI8013902.1
CAI8013903.12-PHOSPHO-L-LACTATE GUANYLYLTRANSFERASE
CAI8013904.12-PHOSPHO-L-LACTATE TRANSFERASE
CAI8013905.1DNA REPLICATION AND REPAIR PROTEIN RECF
CAI8013906.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8013907.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8013908.1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
CAI8013909.1WD40 REPEAT PROTEIN
CAI8013911.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
CAI8013910.1
CAI8013912.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
CAI8013913.1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
CAI8013914.1
CAI8013915.1
CAI8013916.1
CAI8013917.1
CAI8013921.1
CAI8013920.1
CAI8013919.1
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