About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8013975.1
CAI8013974.1
CAI8013973.1
CAI8013972.1
CAI8013971.1
CAI8013976.1
CAI8013977.1
CAI8013978.1GLYCOGEN SYNTHASE KINASE-3 ALPHA
CAI8013979.1
CAI8013980.1
CAI8013981.1CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
CAI8013982.1
CAI8013983.1SODIUM/CALCIUM EXCHANGER
CAI8013984.1SODIUM/CALCIUM EXCHANGER
CAI8013985.1M-PHASE INDUCER PHOSPHATASE DUAL SPECIFICITY PHOSPHATASE CDC25
CAI8013987.1
CAI8013986.1
CAI8013988.1
CAI8013989.1E3 UBIQUITIN-PROTEIN LIGASE KCMF1
CAI8013990.1
CAI8013991.1TYROSINE-PROTEIN KINASE RECEPTOR
CAI8013992.1WD-40 REPEAT PROTEIN
CAI8013994.1WD-40 REPEAT PROTEIN
CAI8013993.1
CAI8013996.1
CAI8013995.1
CAI8013997.1
CAI8013998.1
CAI8014001.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014005.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014004.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014003.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014002.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014000.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8013999.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014006.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014007.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014008.1BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II
CAI8014009.1SPONDIN
CAI8014010.1
CAI8014011.1UNCHARACTERIZED
CAI8014012.1BROMODOMAIN-CONTAINING PROTEIN 8
CAI8014013.1BROMODOMAIN-CONTAINING PROTEIN 8
CAI8014014.1BROMODOMAIN-CONTAINING PROTEIN 8
CAI8014015.1BROMODOMAIN-CONTAINING PROTEIN 8
CAI8014016.1C10ORF188 FAMILY MEMBER
CAI8014017.1C10ORF188 FAMILY MEMBER
CAI8014018.1UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED
CAI8014021.12,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
CAI8014020.12,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
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