About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60104ZGC:195170
Paelopatides60105SI:CH211-108C17.2-RELATED-RELATED
Paelopatides60106-
Paelopatides60107-
Paelopatides60108REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60109SOX TRANSCRIPTION FACTOR
Paelopatides60110ACTIN
Paelopatides60111GLYCINE AMIDINOTRANSFERASE, MITOCHONDRIAL
Paelopatides60112ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60113ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60114SET DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60115-
Paelopatides60116HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
Paelopatides60117ADIPOR/PROGESTIN RECEPTOR-RELATED
Paelopatides60118-
Paelopatides60119ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides60120ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60121-
Paelopatides60122LEUCOKININ RECEPTOR-RELATED
Paelopatides60123RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
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