About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60024TONSOKU-LIKE PROTEIN
Paelopatides60025PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60026TONSOKU-LIKE PROTEIN
Paelopatides60027MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10
Paelopatides60028DISCS LARGE
Paelopatides60029FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED
Paelopatides60030PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED
Paelopatides60031PROTEIN CBG26694
Paelopatides60032TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides60033ENZYMATIC POLYPROTEIN-RELATED
Paelopatides60034CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides60035-
Paelopatides60036ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides60037-
Paelopatides60038PROTEIN CBG26694
Paelopatides60039REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60040PEROXISOMAL SARCOSINE OXIDASE
Paelopatides60041PEROXISOMAL SARCOSINE OXIDASE
Paelopatides60042ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60043UNCHARACTERIZED
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