About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59898-
Paelopatides59899CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59900-
Paelopatides59901SI:CH211-196P9.1-RELATED
Paelopatides59902IP13529P
Paelopatides59903NICOLIN 1
Paelopatides59904TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN
Paelopatides59905MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Paelopatides59906-
Paelopatides59907PROTEIN CBG26694
Paelopatides59908-
Paelopatides59909FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59910-
Paelopatides59911HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides59912BREAST CANCER METASTASIS-SUPPRESSOR 1
Paelopatides59913ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59914PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides59915FOUR AND A HALF LIM DOMAINS PROTEIN
Paelopatides59916PROTEIN CBG26694
Paelopatides59917LIM DOMAIN-CONTAINING PROTEIN
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