About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59838ACETYLCHOLINESTERASE
Paelopatides59839ATILLA, ISOFORM B-RELATED-RELATED
Paelopatides59840-
Paelopatides59841-
Paelopatides59842GTP-BINDING
Paelopatides59843-
Paelopatides59844TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides59845PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides59846PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides59847ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59848LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 2-RELATED
Paelopatides59849TRANSPOSON
Paelopatides59850TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides59851CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides59852LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 3
Paelopatides5985330S 40S RIBOSOMAL PROTEIN
Paelopatides59854ATPASE N2B
Paelopatides59855ATPASE N2B
Paelopatides59856POL PROTEIN
Paelopatides59857ENDONUCLEASE-RELATED
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