About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59772PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59773PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59774RETROTRANSPOSON
Paelopatides59775PROTEIN CBG26694
Paelopatides59777ATP-DEPENDENT RNA HELICASE
Paelopatides59778GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE
Paelopatides59779POL PROTEIN
Paelopatides59780-
Paelopatides59781REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59782-
Paelopatides59783UNCHARACTERIZED
Paelopatides59784UNCHARACTERIZED
Paelopatides59785PROTEIN CBG26694
Paelopatides59786OXIDASE/PEROXIDASE
Paelopatides59787OXIDASE/PEROXIDASE
Paelopatides59788-
Paelopatides59789ENZYMATIC POLYPROTEIN-RELATED
Paelopatides59790OXIDASE/PEROXIDASE
Paelopatides59791-
Paelopatides59792SOLUTE CARRIER FAMILY 17
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