About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59793LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED
Paelopatides59794FI20236P1
Paelopatides59795EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Paelopatides59796EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I
Paelopatides59797FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59798-
Paelopatides59799PROTEIN CBG26694
Paelopatides59800PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides59801RETROTRANSPOSON
Paelopatides59802L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides59803TRANSPOSON
Paelopatides59804REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides59805FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59806FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides59807SULFOTRANSFERASE SULT
Paelopatides59808VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28
Paelopatides59811ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides59812SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides59813TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Paelopatides59814NETRIN/LAMININ-RELATED
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