About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides59858HYR DOMAIN-CONTAINING PROTEIN
Paelopatides59859-
Paelopatides59860PROTEIN CBG26694
Paelopatides59861PROTEIN CBG26694
Paelopatides59862-
Paelopatides59863L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides59864-
Paelopatides59865-
Paelopatides59866PHOSPHOPANTETHEINE TRANSFERASE
Paelopatides59867ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE
Paelopatides59868ASPARTYL/LYSYL-TRNA SYNTHETASE
Paelopatides59869ASPARTYL/LYSYL-TRNA SYNTHETASE
Paelopatides59870HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59871HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides59872-
Paelopatides59873RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides59874-
Paelopatides59875BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
Paelopatides59876SI:CH211-108C17.2-RELATED-RELATED
Paelopatides59877RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
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