About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60064SUSHI DOMAIN-CONTAINING PROTEIN 1
Paelopatides60065REVERSE TRANSCRIPTASES
Paelopatides60066-
Paelopatides60067NECTIN-RELATED
Paelopatides60068-
Paelopatides60069PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides60070-
Paelopatides60071-
Paelopatides60072CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60073PROGRAMMED CELL DEATH 4
Paelopatides60074GTP-BINDING
Paelopatides60075-
Paelopatides60076POLYCYSTIN FAMILY MEMBER
Paelopatides60077-
Paelopatides60078-
Paelopatides60079REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60080-
Paelopatides60081-
Paelopatides60082L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides60083MCG48959-RELATED
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