About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60124HELICASE RELATED
Paelopatides60125ENDONUCLEASE-RELATED
Paelopatides60126-
Paelopatides60127-
Paelopatides60128PROTEIN CBG26694
Paelopatides60129-
Paelopatides60130-
Paelopatides60131GTP-BINDING
Paelopatides60132-
Paelopatides60133LD33804P
Paelopatides60134E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
Paelopatides60135-
Paelopatides60136-
Paelopatides60137-
Paelopatides60138ATP-DEPENDENT DNA HELICASE
Paelopatides60139THAP DOMAIN PROTEIN
Paelopatides60140THAP DOMAIN PROTEIN
Paelopatides60141CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60142FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides60143ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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