About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60003ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides60004PROTEIN CBG26694
Paelopatides60005PROTEIN CBG26694
Paelopatides60006PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides60007BEN DOMAIN-CONTAINING PROTEIN 4
Paelopatides60008INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides60009REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60010FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
Paelopatides60011COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
Paelopatides60012DNA HELICASE RECQ FAMILY MEMBER
Paelopatides60013INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides60014TRANSPOSASE, PUTATIVE-RELATED
Paelopatides60015TRANSPOSASE, PUTATIVE-RELATED
Paelopatides60016ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60017ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides60019UNCHARACTERIZED
Paelopatides60020PRO-THYROTROPIN-RELEASING HORMONE
Paelopatides60021UNCHARACTERIZED
Paelopatides60023TONSOKU-LIKE PROTEIN
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