About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides60084-
Paelopatides60085UNCHARACTERIZED
Paelopatides60086-
Paelopatides60087HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides60088HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
Paelopatides60089-
Paelopatides60090-
Paelopatides60091DNA-DIRECTED RNA POLYMERASES I, II, AND III
Paelopatides60092DISCS LARGE
Paelopatides60093ENDONUCLEASE
Paelopatides60094-
Paelopatides60095ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides60096SODIUM/CHLORIDE DEPENDENT TRANSPORTER
Paelopatides60097CYTOCHROME P450 FAMILY 46 SUBFAMILY A
Paelopatides60098-
Paelopatides60099TRANSPOSON
Paelopatides60100-
Paelopatides60101-
Paelopatides60102BONUS, ISOFORM C-RELATED
Paelopatides60103REVERSE TRANSCRIPTASES
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