About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s025.g0069.t1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
Lsat_s025.g0070.t1
Lsat_s025.g0071.t1
Lsat_s025.g0072.t1
Lsat_s025.g0073.t1EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
Lsat_s025.g0074.t1
Lsat_s025.g0075.t1
Lsat_s025.g0076.t1SELENOPROTEIN O
Lsat_s025.g0077.t1
Lsat_s025.g0078.t1GATA ZINC FINGER DOMAIN-CONTAINING
Lsat_s025.g0079.t1FI19922P1-RELATED
Lsat_s025.g0080.t1
Lsat_s025.g0081.t1TETRASPANIN
Lsat_s025.g0082.t1METHIONINE--TRNA LIGASE
Lsat_s025.g0083.t1NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR
Lsat_s025.g0084.t1
Lsat_s025.g0085.t1
Lsat_s025.g0086.t1ODD-SKIPPED - RELATED
Lsat_s025.g0087.t1
Lsat_s025.g0088.t1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Lsat_s025.g0089.t1
Lsat_s025.g0090.t1
Lsat_s025.g0091.t1
Lsat_s025.g0092.t1EG:EG0003.4 PROTEIN-RELATED
Lsat_s025.g0093.t1
Lsat_s025.g0094.t1HCLS1-BINDING PROTEIN 3
Lsat_s025.g0095.t1PHOSPHATIDYLINOSITOL KINASE
Lsat_s025.g0096.t1UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN
Lsat_s025.g0097.t1RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
Lsat_s025.g0098.t1ZINC FINGER PROTEIN
Lsat_s025.g0099.t1
Lsat_s025.g0100.t1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Lsat_s025.g0101.t1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Lsat_s025.g0102.t1REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN
Lsat_s025.g0103.t1BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5
Lsat_s025.g0104.t1FLAVIN MONOAMINE OXIDASE
Lsat_s025.g0105.t1FI01416P
Lsat_s025.g0106.t1IONOTROPIC GLUTAMATE RECEPTOR
Lsat_s025.g0107.t1
Lsat_s025.g0108.t1
Lsat_s025.g0109.t1UPSTREAM BINDING TRANSCRIPTION FACTOR
Lsat_s025.g0110.t1
Lsat_s025.g0111.t1DISCS LARGE
Lsat_s025.g0112.t1
Lsat_s025.g0113.t1
Lsat_s025.g0114.t1
Lsat_s025.g0115.t1ACID PHOSPHATASE-RELATED
Lsat_s025.g0116.t1LOW-DENSITY LIPOPROTEIN RECEPTOR CLASS A DOMAIN-CONTAINING PROTEIN 2
Lsat_s025.g0117.t1SI:DKEY-122A22.2
Lsat_s025.g0118.t1SERINE/THREONINE-PROTEIN KINASE RIO1
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