About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s024.g0382.t1
Lsat_s024.g0383.t1
Lsat_s024.g0384.t1
Lsat_s024.g0385.t1
Lsat_s024.g0386.t1
Lsat_s024.g0387.t1LD33804P
Lsat_s024.g0388.t1AMINO ACID TRANSPORTER
Lsat_s024.g0389.t1ZINC KNUCKLE DOMAINCONTAINING PROTEIN
Lsat_s024.g0390.t1AMINO ACID TRANSPORTER
Lsat_s024.g0391.t1E3 UBIQUITIN-PROTEIN LIGASE ZNRF1-LIKE PROTEIN
Lsat_s024.g0392.t1
Lsat_s024.g0393.t1DOCKING PROTEIN RELATED
Lsat_s024.g0394.t1LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
Lsat_s024.g0395.t1
Lsat_s024.g0396.t1RAS-RELATED PROTEIN RAB
Lsat_s024.g0397.t1SODIUM/HYDROGEN EXCHANGER
Lsat_s024.g0398.t1ZINC FINGER, RING/FYVE/PHD-TYPE
Lsat_s024.g0399.t1
Lsat_s024.g0400.t1TWISTED GASTRULATION PROTEIN HOMOLOG 1-A-RELATED
Lsat_s024.g0401.t1
Lsat_s024.g0402.t1GLUCOSE-6-PHOSPHATE ISOMERASE
Lsat_s024.g0403.t1SYNAPTIC VESICLE MEMBRANE PROTEIN VAT-1 HOMOLOG-LIKE
Lsat_s024.g0404.t1GLYCOSYLTRANSFERASE
Lsat_s024.g0405.t1
Lsat_s024.g0406.t1
Lsat_s024.g0407.t1
Lsat_s024.g0408.t1
Lsat_s024.g0409.t1
Lsat_s024.g0410.t1
Lsat_s024.g0411.t1
Lsat_s024.g0412.t1
Lsat_s024.g0413.t1INTERFERON REGULATORY FACTOR
Lsat_s024.g0414.t1
Lsat_s024.g0415.t1DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED
Lsat_s024.g0416.t1TRANSMEMBRANE PROTEIN 189
Lsat_s024.g0417.t1RIKEN CDNA 4933402J07 GENE
Lsat_s024.g0418.t1PALMITOYLTRANSFERASE
Lsat_s024.g0419.t1
Lsat_s024.g0420.t1
Lsat_s024.g0421.t1
Lsat_s024.g0422.t1
Lsat_s024.g0423.t1
Lsat_s024.g0424.t1
Lsat_s024.g0425.t1GUANINE NUCLEOTIDE EXCHANGE FACTOR MSS4
Lsat_s024.g0426.t1NEFA-INTERACTING NUCLEAR PROTEIN NIP30
Lsat_s024.g0427.t1NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT
Lsat_s024.g0428.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H
Lsat_s024.g0429.t1STEROL O-ACYLTRANSFERASE
Lsat_s024.g0430.t1
Lsat_s024.g0431.t1TBC1 DOMAIN FAMILY MEMBER 20/GTPASE
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