About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s007.g0678.t1SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION
Lsat_s007.g0679.t1-
Lsat_s007.g0680.t1RING/U-BOX SUPERFAMILY PROTEIN
Lsat_s007.g0681.t1RING/U-BOX SUPERFAMILY PROTEIN
Lsat_s007.g0682.t1NUCLEAR RECEPTOR BINDING FACTOR 2
Lsat_s007.g0683.t1ZINC FINGER CCHC DOMAIN-CONTAINING
Lsat_s007.g0684.t1E3 UBIQUITIN-PROTEIN LIGASE TM129
Lsat_s007.g0685.t1SET AND MYND DOMAIN-CONTAINING PROTEIN 5
Lsat_s007.g0686.t1TANDEM PH DOMAIN CONTAINING PROTEIN
Lsat_s007.g0687.t1PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
Lsat_s007.g0688.t1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
Lsat_s007.g0689.t1VESICULAR MANNOSE-BINDING LECTIN
Lsat_s007.g0690.t1CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1
Lsat_s007.g0691.t1-
Lsat_s007.g0692.t1TRANSMEMBRANE PROTEIN 180
Lsat_s007.g0693.t1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
Lsat_s007.g0694.t1-
Lsat_s007.g0695.t1ZIPPER PUTATIVE TUMOR SUPPRESSOR 2 HOMOLOG-LIKE PROTEIN-RELATED
Lsat_s007.g0696.t1PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
Lsat_s007.g0697.t1RAI16 PROTEIN-RELATED
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