Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s024.g0132.t1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| Lsat_s024.g0133.t1 | |
| Lsat_s024.g0134.t1 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS N |
| Lsat_s024.g0135.t1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
| Lsat_s024.g0136.t1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
| Lsat_s024.g0137.t1 | RAN BINDING PROTEIN 9-RELATED |
| Lsat_s024.g0138.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s024.g0139.t1 | UNCHARACTERIZED |
| Lsat_s024.g0140.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Lsat_s024.g0141.t1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
| Lsat_s024.g0142.t1 | PUTATIVE ATP-ASE |
| Lsat_s024.g0143.t1 | SYNAPTOBREVIN FAMILY MEMBER |
| Lsat_s024.g0144.t1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Lsat_s024.g0145.t1 | |
| Lsat_s024.g0146.t1 | |
| Lsat_s024.g0147.t1 | |
| Lsat_s024.g0148.t1 | |
| Lsat_s024.g0149.t1 | |
| Lsat_s024.g0150.t1 | CHECKPOINT SUPPRESSOR 1-LIKE, ISOFORM A-RELATED |
| Lsat_s024.g0151.t1 | PANTOTHENATE KINASE |
| Lsat_s024.g0152.t1 | UNNAMED PRODUCT |
| Lsat_s024.g0153.t1 | |
| Lsat_s024.g0154.t1 | |
| Lsat_s024.g0155.t1 | ELYS PROTEIN |
| Lsat_s024.g0156.t1 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
| Lsat_s024.g0157.t1 | |
| Lsat_s024.g0158.t1 | - |
| Lsat_s024.g0159.t1 | TRANSMEMBRANE PROTEIN 208 |
| Lsat_s024.g0160.t1 | CHST5 PROTEIN |
| Lsat_s024.g0161.t1 | |
| Lsat_s024.g0162.t1 | PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE |
| Lsat_s024.g0163.t1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21 |
| Lsat_s024.g0164.t1 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 4 HOMOLOG |
| Lsat_s024.g0165.t1 | IMPORTIN BETA |
| Lsat_s024.g0166.t1 | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s024.g0167.t1 | ZINC FINGER PROTEIN |
| Lsat_s024.g0168.t1 | BAX INHIBITOR-RELATED |
| Lsat_s024.g0169.t1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| Lsat_s024.g0170.t1 | |
| Lsat_s024.g0171.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s024.g0172.t1 | RNA HELICASE |
| Lsat_s024.g0173.t1 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
| Lsat_s024.g0174.t1 | |
| Lsat_s024.g0175.t1 | MACROGLOBULIN / COMPLEMENT |
| Lsat_s024.g0176.t1 | MACROGLOBULIN / COMPLEMENT |
| Lsat_s024.g0177.t1 | MACROGLOBULIN / COMPLEMENT |
| Lsat_s024.g0178.t1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
| Lsat_s024.g0179.t1 | TYPE-1 ANGIOTENSIN II RECEPTOR-ASSOCIATED PROTEIN |
| Lsat_s024.g0180.t1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Lsat_s024.g0181.t1 | 5'-NUCLEOTIDASE-RELATED |
