
Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)
Lamellibrachia satsuma Miura, 1997
1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)
The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50 | 8,074/6,600 | 40.2 | - | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s007.g0678.t1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
| Lsat_s007.g0679.t1 | - |
| Lsat_s007.g0680.t1 | RING/U-BOX SUPERFAMILY PROTEIN |
| Lsat_s007.g0681.t1 | RING/U-BOX SUPERFAMILY PROTEIN |
| Lsat_s007.g0682.t1 | NUCLEAR RECEPTOR BINDING FACTOR 2 |
| Lsat_s007.g0683.t1 | ZINC FINGER CCHC DOMAIN-CONTAINING |
| Lsat_s007.g0684.t1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
| Lsat_s007.g0685.t1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 5 |
| Lsat_s007.g0686.t1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| Lsat_s007.g0687.t1 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED |
| Lsat_s007.g0688.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 |
| Lsat_s007.g0689.t1 | VESICULAR MANNOSE-BINDING LECTIN |
| Lsat_s007.g0690.t1 | CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s007.g0691.t1 | - |
| Lsat_s007.g0692.t1 | TRANSMEMBRANE PROTEIN 180 |
| Lsat_s007.g0693.t1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Lsat_s007.g0694.t1 | - |
| Lsat_s007.g0695.t1 | ZIPPER PUTATIVE TUMOR SUPPRESSOR 2 HOMOLOG-LIKE PROTEIN-RELATED |
| Lsat_s007.g0696.t1 | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT |
| Lsat_s007.g0697.t1 | RAI16 PROTEIN-RELATED |