Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s023.g0356.t1 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
| Lsat_s023.g0357.t1 | UNCHARACTERIZED |
| Lsat_s023.g0358.t1 | PROTEIN DISULFIDE ISOMERASE |
| Lsat_s023.g0359.t1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Lsat_s023.g0360.t1 | |
| Lsat_s023.g0361.t1 | |
| Lsat_s023.g0362.t1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Lsat_s023.g0363.t1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Lsat_s023.g0364.t1 | |
| Lsat_s023.g0365.t1 | |
| Lsat_s023.g0366.t1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Lsat_s023.g0367.t1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Lsat_s023.g0368.t1 | AQUAPORIN OR AQUAGLYCEROPORIN RELATED |
| Lsat_s023.g0369.t1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| Lsat_s023.g0370.t1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Lsat_s023.g0371.t1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Lsat_s023.g0372.t1 | ADP RIBOSYLATION FACTOR-RELATED |
| Lsat_s023.g0373.t1 | |
| Lsat_s023.g0374.t1 | |
| Lsat_s023.g0375.t1 | |
| Lsat_s023.g0376.t1 | |
| Lsat_s023.g0377.t1 | 28S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL |
| Lsat_s023.g0378.t1 | EME1 PROTEIN |
| Lsat_s023.g0379.t1 | TRANSMEMBRANE ANCHOR PROTEIN 1 |
| Lsat_s023.g0380.t1 | NUCLEOTIDE-BINDING PROTEIN NBP35 YEAST -RELATED |
| Lsat_s023.g0381.t1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Lsat_s023.g0382.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s023.g0383.t1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| Lsat_s023.g0384.t1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
| Lsat_s023.g0385.t1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| Lsat_s023.g0386.t1 | UNCHARACTERIZED |
| Lsat_s023.g0387.t1 | |
| Lsat_s023.g0388.t1 | INTERFERON REGULATORY FACTOR |
| Lsat_s023.g0389.t1 | |
| Lsat_s023.g0390.t1 | UNCHARACTERIZED |
| Lsat_s023.g0391.t1 | OSJNBA0013A04.12 PROTEIN |
| Lsat_s023.g0392.t1 | NUCLEAR RECEPTOR COACTIVATOR 4 |
| Lsat_s023.g0393.t1 | INTERFERON REGULATORY FACTOR |
| Lsat_s023.g0394.t1 | |
| Lsat_s023.g0395.t1 | |
| Lsat_s023.g0396.t1 | SI:CH211-201H21.5-RELATED |
| Lsat_s023.g0397.t1 | PROTEIN CBG04600 |
| Lsat_s023.g0398.t1 | GUANYLYL CYCLASE |
| Lsat_s023.g0399.t1 | |
| Lsat_s023.g0400.t1 | |
| Lsat_s023.g0401.t1 | UBIQUITIN SPECIFIC PROTEINASE |
| Lsat_s023.g0402.t1 | |
| Lsat_s023.g0403.t1 | RASSF |
| Lsat_s023.g0404.t1 | UNCHARACTERIZED |
| Lsat_s023.g0405.t1 |
