About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s023.g0206.t1RNA POLYMERASE II-ASSOCIATED FACTOR 1 HOMOLOG
Lsat_s023.g0207.t1
Lsat_s023.g0208.t1BETA-1,4-GLUCURONYLTRANSFERASE 1
Lsat_s023.g0209.t1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
Lsat_s023.g0210.t1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 29
Lsat_s023.g0211.t1TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE
Lsat_s023.g0212.t1
Lsat_s023.g0213.t1
Lsat_s023.g0214.t1USP DOMAIN-CONTAINING PROTEIN
Lsat_s023.g0215.t1TRANSMEMBRANE PROTEIN 196
Lsat_s023.g0216.t1NUCLEAR EXPORT MEDIATOR FACTOR NEMF
Lsat_s023.g0217.t1
Lsat_s023.g0218.t1
Lsat_s023.g0219.t1
Lsat_s023.g0220.t1
Lsat_s023.g0221.t1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2
Lsat_s023.g0222.t1NEUROPEPTIDE Y RECEPTOR
Lsat_s023.g0223.t1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2
Lsat_s023.g0224.t1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Lsat_s023.g0225.t1A-KINASE ANCHOR PROTEIN 14
Lsat_s023.g0226.t1CELL DIVISION CYCLE 16,23,27
Lsat_s023.g0227.t1MANNOSE-6-PHOSPHATE ISOMERASE
Lsat_s023.g0228.t1ECTO-NOX DISULFIDE-THIOL EXCHANGER
Lsat_s023.g0229.t1DNA-DIRECTED RNA POLYMERASE
Lsat_s023.g0230.t1TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED
Lsat_s023.g0231.t1D-TYROSYL-TRNA TYR DEACYLASE
Lsat_s023.g0232.t1POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED
Lsat_s023.g0233.t1
Lsat_s023.g0234.t1BETA-LACTAMASE-RELATED
Lsat_s023.g0235.t1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL
Lsat_s023.g0236.t1INTIMAL THICKNESS RECEPTOR-RELATED
Lsat_s023.g0237.t1TRANSMEMBRANE PROTEIN 246
Lsat_s023.g0238.t1CALCIUM-BINDING PROTEIN 8-RELATED
Lsat_s023.g0239.t1ZINC FINGER PROTEIN
Lsat_s023.g0240.t1
Lsat_s023.g0241.t139S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
Lsat_s023.g0242.t1PROBABLE MEMBRANE PROTEIN DUF221-RELATED
Lsat_s023.g0243.t1UBIQUITIN-ACTIVATING ENZYME E1
Lsat_s023.g0244.t1FAD-DEPENDENT OXIDOREDUCTASE
Lsat_s023.g0245.t1RAB3-GAP REGULATORY DOMAIN
Lsat_s023.g0246.t1RAB3-GAP REGULATORY DOMAIN
Lsat_s023.g0247.t1PHOSPHOLIPASE B, PLB1
Lsat_s023.g0248.t1PHOSPHOLIPASE B, PLB1
Lsat_s023.g0249.t1PROTEIN CBG12054-RELATED
Lsat_s023.g0250.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s023.g0251.t1
Lsat_s023.g0252.t1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
Lsat_s023.g0253.t126S PROTEASOME REGULATORY SUBUNIT
Lsat_s023.g0254.t1CATION CHANNEL SPERM-ASSOCIATED PROTEIN 2
Lsat_s023.g0255.t1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
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