Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s023.g0306.t1 | |
| Lsat_s023.g0307.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2C |
| Lsat_s023.g0308.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s023.g0309.t1 | TRANSPOSON |
| Lsat_s023.g0310.t1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| Lsat_s023.g0311.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Lsat_s023.g0312.t1 | CAMK FAMILY PROTEIN KINASE |
| Lsat_s023.g0313.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Lsat_s023.g0314.t1 | MEVALONATE KINASE/GALACTOKINASE |
| Lsat_s023.g0315.t1 | FYVE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Lsat_s023.g0316.t1 | |
| Lsat_s023.g0317.t1 | |
| Lsat_s023.g0318.t1 | |
| Lsat_s023.g0319.t1 | |
| Lsat_s023.g0320.t1 | GUANYLYL CYCLASE |
| Lsat_s023.g0321.t1 | CASEIN KINASE-RELATED |
| Lsat_s023.g0322.t1 | BANK1/PIK3AP1 FAMILY MEMBER |
| Lsat_s023.g0323.t1 | |
| Lsat_s023.g0324.t1 | BANK1/PIK3AP1 FAMILY MEMBER |
| Lsat_s023.g0325.t1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Lsat_s023.g0326.t1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Lsat_s023.g0327.t1 | N-ALPHA-ACETYLTRANSFERASE 60 |
| Lsat_s023.g0328.t1 | N-LINKED OLIGOSACCHARIDE PROCESSING |
| Lsat_s023.g0329.t1 | RIBOSOME BIOGENESIS PROTEIN TSR3 HOMOLOG |
| Lsat_s023.g0330.t1 | |
| Lsat_s023.g0331.t1 | |
| Lsat_s023.g0332.t1 | |
| Lsat_s023.g0333.t1 | 80 KDA MCM3-ASSOCIATED PROTEIN |
| Lsat_s023.g0334.t1 | CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN |
| Lsat_s023.g0335.t1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| Lsat_s023.g0336.t1 | SHIPPO-1-RELATED |
| Lsat_s023.g0337.t1 | |
| Lsat_s023.g0338.t1 | |
| Lsat_s023.g0339.t1 | NETRIN RECEPTOR UNC5 |
| Lsat_s023.g0340.t1 | |
| Lsat_s023.g0341.t1 | - |
| Lsat_s023.g0342.t1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN |
| Lsat_s023.g0343.t1 | |
| Lsat_s023.g0344.t1 | |
| Lsat_s023.g0345.t1 | |
| Lsat_s023.g0346.t1 | SERINE/THREONINE-PROTEIN KINASE |
| Lsat_s023.g0347.t1 | |
| Lsat_s023.g0348.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s023.g0349.t1 | |
| Lsat_s023.g0350.t1 | UNCHARACTERIZED |
| Lsat_s023.g0351.t1 | CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19 |
| Lsat_s023.g0352.t1 | MOLTING PROTEIN MLT-4 |
| Lsat_s023.g0353.t1 | IRE1-RELATED |
| Lsat_s023.g0354.t1 | TEX2 PROTEIN-RELATED |
| Lsat_s023.g0355.t1 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 |
