About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s007.g0518.t1ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1
Lsat_s007.g0519.t1DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
Lsat_s007.g0520.t1INOSITOL POLYPHOSPHATE KINASE
Lsat_s007.g0521.t1ANKYRIN REPEAT-CONTAINING
Lsat_s007.g0522.t1DIMETHYLADENOSINE TRANSFERASE
Lsat_s007.g0523.t1NOTCH LIGAND FAMILY MEMBER
Lsat_s007.g0524.t1VESICLE PROTEIN SORTING-ASSOCIATED
Lsat_s007.g0525.t1COILED-COIL DOMAIN-CONTAINING PROTEIN 152
Lsat_s007.g0526.t1SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1
Lsat_s007.g0527.t1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
Lsat_s007.g0528.t1DNAJ-LIKE-2, ISOFORM A-RELATED
Lsat_s007.g0529.t1CENTROSOMAL PROTEIN OF 78 KDA
Lsat_s007.g0530.t1-
Lsat_s007.g0531.t1CADHERIN DOMAIN-CONTAINING PROTEIN
Lsat_s007.g0532.t1CENTROSOMAL PROTEIN OF 78 KDA
Lsat_s007.g0533.t1-
Lsat_s007.g0534.t1KICSTOR COMPLEX PROTEIN SZT2
Lsat_s007.g0535.t1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8
Lsat_s007.g0536.t1-
Lsat_s007.g0537.t1-
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