Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s024.g0232.t1 | 5'->3' EXORIBONUCLEASE |
| Lsat_s024.g0233.t1 | WD REPEAT CONTAINING PROTEIN 3 WDR3 |
| Lsat_s024.g0234.t1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| Lsat_s024.g0235.t1 | TRANSCRIPTION FACTOR CASTOR PROTEIN MING -RELATED |
| Lsat_s024.g0236.t1 | MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT |
| Lsat_s024.g0237.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 150 |
| Lsat_s024.g0238.t1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT |
| Lsat_s024.g0239.t1 | |
| Lsat_s024.g0240.t1 | |
| Lsat_s024.g0241.t1 | |
| Lsat_s024.g0242.t1 | NEUROPEPTIDES RECEPTOR |
| Lsat_s024.g0243.t1 | BACTERIOHEMERYTHRIN |
| Lsat_s024.g0244.t1 | |
| Lsat_s024.g0245.t1 | SPERM ASSOCIATED ANTIGEN 7 |
| Lsat_s024.g0246.t1 | NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT |
| Lsat_s024.g0247.t1 | |
| Lsat_s024.g0248.t1 | CATION-TRANSPORTING ATPASE-RELATED |
| Lsat_s024.g0249.t1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Lsat_s024.g0250.t1 | PROTEIN C3ORF33 |
| Lsat_s024.g0251.t1 | UNCHARACTERIZED |
| Lsat_s024.g0252.t1 | UNCHARACTERIZED |
| Lsat_s024.g0253.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| Lsat_s024.g0254.t1 | UNCHARACTERIZED |
| Lsat_s024.g0255.t1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| Lsat_s024.g0256.t1 | |
| Lsat_s024.g0257.t1 | UNCHARACTERIZED |
| Lsat_s024.g0258.t1 | AUSTRALIN, ISOFORM A-RELATED |
| Lsat_s024.g0259.t1 | SIMILAR TO HYPOTHETICAL PROTEIN FLJ20508 |
| Lsat_s024.g0260.t1 | 5-OXOPROLINASE RELATED |
| Lsat_s024.g0261.t1 | PEROXISOME ASSEMBLY PROTEIN 26 |
| Lsat_s024.g0262.t1 | EXOSOME COMPLEX COMPONENT |
| Lsat_s024.g0263.t1 | OVOCHYMASE-RELATED |
| Lsat_s024.g0264.t1 | |
| Lsat_s024.g0265.t1 | |
| Lsat_s024.g0266.t1 | |
| Lsat_s024.g0267.t1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73 |
| Lsat_s024.g0268.t1 | ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD |
| Lsat_s024.g0269.t1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
| Lsat_s024.g0270.t1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| Lsat_s024.g0271.t1 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
| Lsat_s024.g0272.t1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Lsat_s024.g0273.t1 | |
| Lsat_s024.g0274.t1 | UNC-93 RELATED |
| Lsat_s024.g0275.t1 | MSF1/PX19 RELATED |
| Lsat_s024.g0276.t1 | DLEC1 DELETED IN LUNG AND ESOPHAGEAL CANCER 1 |
| Lsat_s024.g0277.t1 | POLYAMINE-MODULATED FACTOR 1-BINDING PROTEIN 1-RELATED |
| Lsat_s024.g0278.t1 | UPF0711 PROTEIN C18ORF21 |
| Lsat_s024.g0279.t1 | |
| Lsat_s024.g0280.t1 | |
| Lsat_s024.g0281.t1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
