About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57322BONUS, ISOFORM C-RELATED
Paelopatides57323ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides57324BONUS, ISOFORM C-RELATED
Paelopatides57327PROTEIN, PUTATIVE-RELATED
Paelopatides57328-
Paelopatides57329ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides57330ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides57331L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides57332-
Paelopatides57333PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides57334PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides57335RETROTRANSPOSON
Paelopatides57336G DOMAIN-CONTAINING PROTEIN
Paelopatides57337TRANSPOSON
Paelopatides57338SOLUTE CARRIER FAMILY 22 MEMBER
Paelopatides57339-
Paelopatides57340ALPHA-L-FUCOSIDASE
Paelopatides57341ALPHA-L-FUCOSIDASE
Paelopatides57342REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57343EPM2A-INTERACTING PROTEIN 1
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