About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides57301BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 5
Paelopatides57302HEPARAN SULFATE SULFOTRANSFERASE
Paelopatides57303CONNECTIVE TISSUE GROWTH FACTOR-RELATED
Paelopatides57304ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides57305BUCENTAUR RELATED
Paelopatides57306REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides57308ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides57309TUBULIN
Paelopatides57310-
Paelopatides57311NOVEL ZZ TYPE ZINC FINGER DOMAIN CONTAINING PROTEIN
Paelopatides57312VACUOLAR PROTEIN 8
Paelopatides57313-
Paelopatides57314MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2
Paelopatides57315ACROSIN-RELATED
Paelopatides57316-
Paelopatides57317-
Paelopatides57318T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN
Paelopatides57319ZNF44 PROTEIN
Paelopatides57320CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides57321TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
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