About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13351SERINE/THREONINE-PROTEIN KINASE
HS13352PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT
HS13353TENASCIN
HS13354TNF RECEPTOR ASSOCIATED FACTOR
HS13355GRAM DOMAIN-CONTAINING PROTEIN 2B-RELATED
HS13356ZINC-FINGER PROTEIN NOLZ1-RELATED
HS13357PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER
HS13358EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
HS13359UNCHARACTERIZED
HS13360E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS13361HOMER
HS13362P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED
HS13363BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE 1
HS13364AMINOMETHYLTRANSFERASE
HS13365ARYLSULFATASE
HS13366LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN
HS13367SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP
HS13368ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
HS13369TUBULIN-SPECIFIC CHAPERONE A
HS13370HOMEOBOX PROTEIN ORTHOPEDIA
HS13371WDR41-RELATED
HS13372CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
HS13373CORTICOTROPIN-RELEASING FACTOR-BINDING PROTEIN
HS13374S100 CALCIUM-BINDING PROTEIN
HS13375G-PROTEIN COUPLED RECEPTOR
HS13376G-PROTEIN COUPLED RECEPTOR
HS13377G-PROTEIN COUPLED RECEPTOR
HS13378G-PROTEIN COUPLED RECEPTOR
HS13379SYNAPTIC VESICLE GLYCOPROTEIN 2
HS13380PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
HS133813-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE
HS13382GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
HS13383LIM/HOMEOBOX PROTEIN LHX
HS13384MITOTIC-SPINDLE ORGANIZING PROTEIN 2A-RELATED
HS13385PROTEIN CBG20824
HS13386ADP RIBOSYLATION FACTOR-RELATED
HS13387PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
HS13388PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
HS13389ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS13390DUF614 FAMILY PROTEIN-RELATED
HS1339126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4
HS13392TESMIN/TSO1-RELATED
HS13393SEC31-RELATED PROTEIN
HS13394ENOLASE-PHOSPHATASE E1
HS13395RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN
HS13396SYNAPTOBREVIN FAMILY MEMBER
HS13397S-ADENOSYLMETHIONINE SYNTHETASE
HS13398ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6
HS13399PA-PL1 PHOSPHOLIPASE FAMILY
HS13400KINESIN-RELATED PROTEIN 6
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