About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS13101CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED
HS13102SOLUTE CARRIER FAMILY 35
HS13103OXYSTEROL-BINDING PROTEIN-RELATED
HS13104VACUOLAR PROTON ATPASES
HS13105I-KAPPA-B-LIKE PROTEIN IKBL
HS13106CELL ADHESION MOLECULE
HS13107RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
HS13108PROTEIN PHOSPHATASE 2C
HS13109
HS13110
HS13111CALCIUM BINDING PROTEINS
HS13112E3 UBIQUITIN-PROTEIN LIGASE TRIM
HS13113OVOCHYMASE-RELATED
HS13114ANTHRAX TOXIN RECEPTOR
HS13115PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
HS13116ANNEXIN
HS13117NEUROPEPTIDE Y RECEPTOR
HS13118TRANSCRIPTION INITIATION FACTOR IIB-RELATED
HS13119RAB11-RELATED
HS13120
HS13121CALCIUM-BINDING PROTEIN 1-RELATED
HS13122GAMMA GLUTAMYL TRANSPEPTIDASE
HS13123GAMMA GLUTAMYL TRANSPEPTIDASE
HS13124-
HS13125CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING
HS13126PHD/F-BOX CONTAINING PROTEIN
HS13127CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
HS13128MORN REPEAT-CONTAINING PROTEIN 3
HS13129TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
HS13130RHO FAMILY GTPASE
HS13131HISTONE-LYSINE N-METHYLTRANSFERASE SETD1
HS13132CARBONIC ANHYDRASE
HS13133CARBONIC ANHYDRASE
HS13134INTEGRAL MEMBRANE PROTEIN DGCR2/IDD
HS13135ES-2 PROTEIN - RELATED
HS13136HOMEOBOX PROTEIN GOOSECOID-RELATED
HS13137MADF DOMAIN TRANSCRIPTION FACTOR
HS13138E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED
HS13139CHEMOTACTIC RECEPTOR
HS13140IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
HS13141IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
HS13142TRANSMEMBRANE PROTEIN 119
HS13143P-SELECTIN GLYCOPROTEIN LIGAND-1
HS13144CORONIN
HS13145SLINGSHOT PROTEIN PHOSPHATASE HOMOLOG
HS13146SYNAPTIC VESICLE GLYCOPROTEIN 2
HS13147MYOSIN
HS13148MUCIN 4-RELATED
HS13149HEAT SHOCK PROTEINP-12.2-RELATED
HS13150SERINE/THREONINE-PROTEIN KINASE TAO1-LIKE PROTEIN
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