About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12851CYCLINS
HS12852MELANIN-CONCENTRATING HORMONE
HS12853GUANYLYL CYCLASE
HS12854DELTA-AMINOLEVULINIC ACID DEHYDRATASE
HS12855FAM11A, B PROTEIN
HS12856TON-B BOX DOMAIN
HS12857SJOEGREN SYNDROME NUCLEAR AUTOANTIGEN 1
HS12858G9A, ISOFORM B
HS12859TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS12860VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
HS12861COLLAGEN ALPHA
HS12862COLLAGEN ALPHA
HS12863MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
HS12864PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
HS12865ENDONUCLEASE-RELATED
HS12866AKNA DOMAIN-CONTAINING PROTEIN
HS12867VESICLE PROTEIN SORTING-ASSOCIATED
HS12868NIBAN FAMILY MEMBER
HS12869SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
HS12870ARRESTIN DOMAIN CONTAINING PROTEIN
HS12871GLUTAMINE SYNTHETASE
HS12872APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
HS12873APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
HS12874JANUS-A/JANUS-B
HS12875ADENOSINE/GUANOSINE DIPHOSPHATASE
HS12876IONOTROPIC GLUTAMATE RECEPTOR
HS12877IRON-SULFUR DOMAIN CONTAINING PROTEIN
HS12878NEUROLIGIN
HS12879NEUROLIGIN
HS12880NEUROLIGIN
HS12881GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5
HS12882ZINC FINGER AND SCAN DOMAIN-CONTAINING
HS12883HAMARTIN
HS12884GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 4 FAMILY
HS12885SI:CH211-196P9.1-RELATED
HS12886HOMEO BOX HB9 LIKE A-RELATED
HS12887BAND 7 PROTEIN-RELATED
HS12888VILLIN
HS12889PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B
HS12890RE48077P
HS12891HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER
HS12892
HS12893ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS12894C20ORF30 PROTEIN
HS12895AMINE OXIDASE
HS12896COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR-RELATED
HS12897PROTEIN VAV
HS12898FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
HS12899TRANSCRIPTION INITIATION FACTOR TFIID
HS12900NUCLEAR HORMONE RECEPTOR
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