About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12551P2Y PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS12552ETS
HS12553BOULE-RELATED
HS12554DNA-BINDING PROTEIN SATB FAMILY MEMBER
HS12555VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
HS12556PROTEIN TAG-278-RELATED
HS12557CARDIAC PHOSPHOLAMBAN
HS12558SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
HS12559V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS12560SOLUTE CARRIER FAMILY 5
HS12561
HS12562ATP-DEPENDENT RNA HELICASE DBP3
HS12563DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED
HS12564INTIMAL THICKNESS RECEPTOR-RELATED
HS12565CYCLIN Y, ISOFORM A
HS12566TENSIN
HS12567C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS12568C-TYPE LECTIN DOMAIN FAMILY 20 MEMBER A-RELATED
HS12569INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN
HS12570INSULIN-LIKE GROWTH FACTOR BINDING PROTEIN
HS12571NISCHARIN RELATED
HS12572CONNEXIN
HS12573TGF-BETA FAMILY
HS12574IMMUNOGLOBULIN
HS12575DULLARD PROTEIN PHOSPHATASE
HS12576UNC80
HS12577UNC80
HS12578MICROTUBULE-ASSOCIATED PROTEIN
HS12579
HS12580MYOSIN LIGHT CHAIN 1, 3
HS12581LANC-LIKE PROTEIN
HS12582TYROSINE-PROTEIN KINASE RECEPTOR
HS12583RECEPTOR ACTIVITY MODIFYING PROTEIN RAMP
HS12584METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN
HS12585KRUEPPEL-LIKE TRANSCRIPTION FACTOR
HS12586CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN B
HS12587HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
HS12588SMALL INTEGRAL MEMBRANE PROTEIN 11A
HS12589VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT
HS12590SEMAPHORIN
HS12591IMPORTIN BETA
HS12592UNCHARACTERIZED
HS12593UNCHARACTERIZED
HS12594CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
HS12595RAS-LIKE FAMILY MEMBER 11
HS12596RESPIRATORY NITRATE REDUCTASE
HS12597PROTEIN UNC-50 HOMOLOG
HS12598SI:CH211-201H21.5-RELATED
HS12599SI:CH211-201H21.5-RELATED
HS12600TYROSINE-PROTEIN KINASE
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