About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12501NEDD4 FAMILY INTERACTING PROTEIN 1/2
HS12502SPROUTY
HS12503SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS12504SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS12505SLIT AND NTRK-LIKE PROTEIN 4-RELATED
HS12506E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED
HS12507RHO-GTPASE-ACTIVATING PROTEIN 6 FAMILY MEMBER
HS12508MORTALITY FACTOR 4-LIKE PROTEIN
HS12509FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
HS12510FI02826P
HS12511REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12512INTERLEUKIN-1 RECEPTOR FAMILY MEMBER
HS12513N4BP1-RELATED
HS12514MISSHAPEN LIKE KINASE 1
HS12515CHASCON, ISOFORM D-RELATED
HS12516CARBOHYDRATE SULFOTRANSFERASE
HS12517PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS1251860S RIBOSOMAL PROTEIN L31
HS12519GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE
HS12520SECRETED PHOSPHOPROTEIN 24
HS12521
HS12522GROWTH FACTOR RECEPTOR-BOUND PROTEIN
HS12523FAST LEU-RICH DOMAIN-CONTAINING
HS12524MALATE DEHYDROGENASE
HS12525ADP-RIBOSYLATION-LIKE FACTOR 6-INTERACTING PROTEIN
HS12526AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT
HS12527UNCHARACTERIZED
HS12528ATP-BINDING CASSETTE SUB-FAMILY B
HS12529F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
HS12530PARTITIONING DEFECTIVE 3 RELATED
HS12531ZONA PELLUCIDA SPERM-BINDING PROTEIN 3
HS12532MUSCLEBLIND-LIKE PROTEIN
HS12533RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
HS12534MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER
HS12535JUNCTIONAL ADHESION MOLECULE B
HS12536ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS12537ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL
HS12538
HS12539ALZHEIMER'S DISEASE BETA-AMYLOID RELATED
HS12540CYSTEINE AND TYROSINE-RICH PROTEIN 1
HS12541ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS12542ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
HS12543SODIUM/CHLORIDE DEPENDENT TRANSPORTER
HS12544PROTEIN CBG26694
HS12545LYSINE-SPECIFIC DEMETHYLASE
HS12546
HS12547LYSINE-SPECIFIC DEMETHYLASE
HS12548FUN14 DOMAIN CONTAINING
HS12549CENTROMERE PROTEIN L
HS12550MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
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