About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12601RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F
HS12602SOX TRANSCRIPTION FACTOR
HS12603
HS12604PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE
HS12605GAMMA TUBULIN COMPLEX PROTEIN
HS12606BTK-BINDING PROTEIN-RELATED
HS12607FIBROBLAST GROWTH FACTOR
HS12608ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B
HS12609CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
HS12610
HS12611SUGAR KINASE
HS12612ANKYRIN REPEAT FAMILY A
HS12613UNCHARACTERIZED
HS12614EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
HS12615
HS12616CYSTEINE-RICH SECRETORY PROTEIN-RELATED
HS12617CYSTEINE-RICH SECRETORY PROTEIN-RELATED
HS12618FILAMIN/GPBP-INTERACTING PROTEIN
HS12619EPITHELIAL CELL-TRANSFORMING SEQUENCE 2 ONCOGENE-LIKE
HS12620CHEMOKINE C-C MOTIF RECEPTOR 1
HS12621HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26
HS12622SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA
HS12623SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA
HS12624SI:DKEY-31G6.6
HS12625STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
HS12626VASCULAR ENDOTHELIAL GROWTH FACTOR
HS12627
HS12628ZINC FINGER PROTEIN RLF
HS12629CYSTATHIONINE BETA-SYNTHASE
HS12630U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT
HS12631OX-2 MEMBRANE GLYCOPROTEIN
HS12632OX-2 MEMBRANE GLYCOPROTEIN
HS12633OX-2 MEMBRANE GLYCOPROTEIN
HS12634OX-2 MEMBRANE GLYCOPROTEIN
HS12635GEM-ASSOCIATED PROTEIN 8
HS12636
HS12637MYELIN PROTEOLIPID
HS12638RAB FAMILY
HS12639TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
HS12640THYMOSIN BETA
HS12641RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER
HS12642
HS12643HISTONE DEACETYLASE 9-RELATED
HS12644GATA-TYPE DOMAIN-CONTAINING PROTEIN
HS12645MITOCHONDRIAL DIVISION PROTEIN 1-RELATED
HS12646OPSIN
HS12647INTERMEDIATE FILAMENT
HS12648ARP2/3 COMPLEX 34 KDA SUBUNIT
HS12649CELL ADHESION MOLECULE
HS12650FOLATE TRANSPORTER
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