About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12401
HS12402ORIGIN RECOGNITION COMPLEX SUBUNIT 4
HS12403METHYL-CPG BINDING PROTEIN, DROSOPHILA
HS12404CENTROMERE PROTEIN E
HS12405T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED
HS12406FERREDOXIN/ADRENODOXIN
HS12407UNCHARACTERIZED
HS12408BEIGE/BEACH-RELATED
HS12409SERINE/THREONINE-PROTEIN KINASE FRAY2
HS12410TRAFFICKING KINESIN-BINDING PROTEIN
HS12411B-BOX DOMAIN CONTAINING
HS124128-OXO-DGTP DIPHOSPHATES NUDT15
HS12413PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
HS12414G-PROTEIN COUPLED RECEPTOR
HS12415
HS12416TRANSMEMBRANE PROTEIN FAM155
HS12417DNA LIGASE 4
HS12418INSULIN RECEPTOR SUBSTRATE
HS12419ACID PHOSPHATASE-RELATED
HS12420INTEGRAL MEMBRANE PROTEIN GPR137
HS12421THIOREDOXIN DOMAIN-CONTAINING PROTEIN 16
HS12422G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER
HS12423SECRETED MODULAR CALCIUM-BINDING PROTEIN
HS12424CLE
HS12425SAP18
HS12426CONNEXIN
HS12427CONNEXIN
HS12428HEMOPEXIN DOMAIN-CONTAINING PROTEIN
HS12429E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
HS12430T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED
HS12431VANG-LIKE PROTEIN
HS12432
HS12433CALSEQUESTRIN
HS12434ANION EXCHANGE PROTEIN
HS12435STERILE20-LIKE KINASE, ISOFORM B-RELATED
HS12436OLIGOPEPTIDE TRANSPORTER-RELATED
HS12437DEDICATOR OF CYTOKINESIS DOCK
HS12438TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
HS12439AGAP011572-PA
HS12440ISLET CELL AUTOANTIGEN 1
HS12441WD40 REPEAT PROTEIN 12, 37
HS12442NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
HS12443NUCLEAR FRAGILE X MENTAL RETARDATION PROTEIN INTERACTING PROTEIN 1
HS12444CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
HS12445CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 47
HS12446TSC22 DOMAIN FAMILY PROTEIN 1
HS12447
HS12448LD18447P
HS12449WW DOMAIN BINDING PROTEIN 4
HS12450TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED
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