About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m，which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS12101METALLOPHOSPHOESTERASE, CALCINEURIN SUPERFAMILY
HS12102PROTEIN SHISA-9-RELATED
HS12103REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12104REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS12105ZINC FINGER AND BTB DOMAIN-CONTAINING
HS12106ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
HS12107CHROMOBOX PROTEIN HOMOLOG 7
HS12108PROTEIN CBG26694
HS12109
HS12110ZINC FINGER PROTEIN
HS12111CHROMOBOX PROTEIN HOMOLOG 7
HS12112CHROMOBOX PROTEIN HOMOLOG 7
HS12113CBP/P300-RELATED
HS12114POLYCOMB GROUP PROTEIN
HS12115SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
HS12116RAN GTPASE-ACTIVATING PROTEIN 1
HS12117
HS12118MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
HS12119MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7
HS12120THYROTROPH EMBRYONIC FACTOR RELATED
HS12121PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A
HS12122CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED
HS12123GUANYLYL CYCLASE
HS12124POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN
HS12125
HS1212628 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN PDGF-ASSOCIATED PROTEIN
HS121273BP-1 RELATED RHOGAP
HS12128CDC42 EFFECTOR PROTEIN BORG
HS12129UNCHARACTERIZED
HS12130ESOPHAGEAL CANCER ASSOCIATED PROTEIN
HS12131PALMITOYLTRANSFERASE ZDHHC16
HS12132DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
HS12133UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED
HS12134ANTHRAX TOXIN RECEPTOR
HS12135INTERPHOTORECEPTOR RETINOID-BINDING PROTEIN
HS12136TGF-BETA FAMILY
HS12137TGF-BETA FAMILY
HS12138TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13
HS12139MITOGEN-ACTIVATED PROTEIN KINASE
HS12140SPERMATHECAL PHYSIOLOGY VARIANT
HS12141SI:CH211-196P9.1-RELATED
HS12142-
HS12143V-SET AND TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN
HS12144CARDIAC-ENRICHED FHL2-INTERACTING PROTEIN-RELATED
HS12145TGF-BETA FAMILY
HS12146SOX100B
HS12147PHOSPHOINOSITIDE-INTERACTING PROTEIN FAMILY MEMBER
HS12148SOLUTE CARRIER FAMILY 2
HS12149RIBONUCLEIC ACID BINDING PROTEIN S1
HS12150CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX19
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